Publications

Tailoring the Trajectory of Cell Rolling with Cytotactic Surfaces  [pdf]
Collin Edington, Hironobu Murata, Richard Koepsel, Jill Andersen, Sungeun Eom, Takeo Kanade, Anna C. Balazs, German Kolmakov, Carsen Kline, Daniel McKeel, Zvi Liron, and Alan J. Russell
Langmuir (accepted), 2011.

Tracking of Hematopoietic Stem Cells in Microscopy Images for Lineage Determination  [pdf]
Sungeun Eom, Seung-il Huh, Dai Fei Elmer Ker, Ryoma Bise, Takeo Kanade, Phil Campbell
IEEE Transactions on Biomedical Engineering (accepted), 2011.

Automating the Decision Process for Real-Time Adaptive Subculture of Stem Cells  [pdf]
Ker, D.F.E., Weiss, L.E., Junkers, S.N., Chen, M., Yin, Z., Sandboth,M.F., Huh, S., Eom, S., Bise, R., Osuna-Highley, E., Kanade, T. and Campbell, P.G.
PLoS ONE 6, 11, pg. e27672, 2011.

Data-driven Prediction of Stem Cell Expansion Cultures  [pdf]
Yin, Z., Ker, D.F.E., Junkers, S.N., Kanade, T., Chen, M., Weiss, L.E. and Campbell, P.G.
33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2011.

Restoring Artifact-Free Microscopy Image Sequences  [pdf]
Zhaozheng Yin, Takeo Kanade.
IEEE International Symposium on Biomedical Imaging 2011.

Restoring DIC Microscopy Images from Multiple Shear Directions.  [pdf]
Zhaozheng Yin, Dai Fei Elmer Ker, Takeo Kanade.
IEEE International Symposium on Biomedical Imaging 2011.

Detection of Mitosis within a Stem Cell Population of High Cell Confluence in Phase-Contrast Microscopy Images  [pdf]
S. Huh and M. Chen
IEEE Computer Vision and Pattern Recognition (CVPR'11), pages 1033-1040, 2011.

Automatic Cell Tracking Applied to Analysis of Cell Migration in Wound Healing Assay  [pdf]
R. Bise, T. Kanade, Z. Yin, and S. Huh
IEEE Engineering in Medicine & Biology Society (EMBS'11), pages 6174-6179, 2011.

Automated mitosis detection of stem cell populations in phase-contrast microscopy images.  [pdf]
Seungil Huh, Dai Fei Elmer Ker, Ryoma Bise, Mei Chen, Takeo Kanade.
IEEE Transactions on Medical Imaging, 30(3):586-596, 2011.

Mitosis detection for stem cell tracking in phase-contrast microscopy images.  [pdf]
Seungil Huh, Sungeun Eom, Ryoma Bise, Zhaozheng Yin, Takeo Kanade.
IEEE International Symposium on Biomedical Imaging (ISBI'11), pp. 2121-2127, 2011.

Reliable Cell Tracking By Global Data Association.  [pdf]
Ryoma Bise, Zhaozheng Yin, Takeo Kanade.
IEEE International Symposium on Biomedical Imaging 2011.

Spatially Directed Guidance of Stem Cell Population Migration by Immobilized Patterns of Growth Factor.  [pdf]
Eric Miller, Kang Li, Takeo Kanade, L. Walker, Lee Weiss, and Phil Campbell
Biomaterials, Vol. 32, January, 2011, pp. 2775 - 2785.

Cell Image Analysis: Algorithms, System and Applications.  [pdf]
Takeo Kanade, Zhaozheng Yin, Ryoma Bise, Seungil Huh, Sungeun Eom, Michael Sandbothe and Mei Chen.
IEEE Workshop on Applications of Computer Vision (WACV) 2011.

Understanding the Optics to Aid Microscopy Image Segmentation.  [pdf]
Zhaozheng Yin, Kang Li, Takeo Kanade and Mei Chen.
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2010.

Cell Segmentation in Microscopy Imagery Using a Bag of Local Bayesian Classifiers.  [pdf]
Zhaozheng Yin, Ryoma Bise, Mei Chen and Takeo Kanade.
IEEE International Symposium on Biomedical Imaging (ISBI) 2010.

Detection of Hematopoietic Stem Cells in Microscopy Images Using a Bank of Ring Filters.  [pdf]
Sungeun Eom, Ryoma Bise and Takeo Kanade.
IEEE International Symposium on Biomedical Imaging (ISBI) 2010.

Heterogeneous Conditional Random Field: Realizing Joint Detection and Segmentation of Cell Regions in Microscopic Images  [pdf]
Jiyan Pan, Takeo Kanade, and Mei Chen
IEEE Conference on Computer Vision and Pattern Recognition (CVPR) 2010, June, 2010.

Mitosis Sequence Detection Using Hidden Conditional Random Fields  [pdf]
Anan Liu, Kang Li, and Takeo Kanade
IEEE International Symposium on Biomedical Imaging (ISBI) 2010, April, 2010.

Learning to Detect Different Types of Cells under Phase Contrast Microscopy.  [pdf]
Jiyan Pan, Takeo Kanade and Mei Chen.
Microscopic Image Analysis with Applications in Biology (MIAAB) 2009.

Reliably Tracking Partially Overlapping Neural Stem Cells in DIC Microscopy Image Sequences.  [pdf]
Ryoma Bide, Kang Li, Sungeun Eom, Takeo Kanade.
International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2009: Workshop on Optical Tissue Image Analysis in Microscopy, Histopathology and Endoscopy (OPTMHisE).

Computer Vision Tracking of Stemness.  [pdf]
Kang Li, Eric Miller, Mei Chen, Takeo Kanade, Lee Weiss, and Phil Campbell.
Proc. IEEE International Symposium on Biomedical Imaging (ISBI): Special Session on In Vivo Microscopic Image Analysis, May, 2008, pp. 847 - 850.

Cell Population Tracking and Lineage Construction with Spatiotemporal Context.  [pdf]
Kang Li, Mei Chen, Takeo Kanade, Eric Miller, Lee Weiss, and Phil Campbell.
Medical Image Analysis, Vol. 12, No. 5, October, 2008.

Cell Population Tracking and Lineage Construction Using Multiple-Model Dynamics Filters and Spatiotemporal Optimization.  [pdf]
Kang Li and Takeo Kanade.
Proceedings of the 2nd International Workshop on Microscopic Image Analysis with Applications in Biology (MIAAB), September, 2007.

Cell Population Tracking and Lineage Construction with Spatiotemporal Context. [pdf]
Kang Li, Mei Chen, and Takeo Kanade.
Proceedings of the 10th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2007, pp. 295 - 302.

Online Tracking of Migrating and Proliferating Cells Imaged with Phase-Contrast Microscopy. [pdf]
Kang Li, Eric Miller, Lee Weiss, Phil Campbell, and Takeo Kanade.
Proceedings of the 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW '06), June, 2006, pp. 65 - 72.

Tracking of Migrating and Proliferating Cells in Phase-Contrast Microscopy Imagery for Tissue Engineering.  [pdf]
Takeo Kanade and Kang Li.
Proceedings of the First International Workshop on Computer Vision for Biomedical Image Applications (CVBIA), October, 2005, pp. 24.